Index

A

add_agent() (lattics.domains.SimulationDomain method) (lattics.domains.Structured2DSimulationDomain method) (lattics.domains.UnstructuredSimulationDomain method) (lattics.simulation.Simulation method)

add_model() (lattics.agent.Agent method) add_simulation_domain() (lattics.simulation.Simulation method) Agent (class in lattics.agent) agents (lattics.simulation.Simulation property) apply_neumann_bc_2d() (in module lattics.numba_functions)

B

bresenham_2d() (in module lattics.numba_functions)

C

CellFunctionModel (class in lattics.cellfunctions)

clone() (lattics.agent.Agent method) current_time (lattics.cellfunctions.FixedIncrementalCellCycle property)

D

diffusion_solver_ftcs_2d() (in module lattics.numba_functions) diffusion_solver_lod_2d() (in module lattics.numba_functions)

diffusion_solver_lod_3d() (in module lattics.numba_functions) displace_agent_2d() (in module lattics.numba_functions) displacement_trial_2d() (in module lattics.numba_functions)

F

FixedIncrementalCellCycle (class in lattics.cellfunctions)

G

get_attribute() (lattics.agent.Agent method)

get_neighborhood_2d() (in module lattics.numba_functions) get_neighborhood_3d() (in module lattics.numba_functions)

H

has_attribute() (lattics.agent.Agent method)

I

initialize() (lattics.domains.SimulationDomain method) (lattics.domains.Structured2DSimulationDomain method) (lattics.domains.UnstructuredSimulationDomain method) initialize_agent_attributes() (lattics.cellfunctions.CellFunctionModel method) (lattics.cellfunctions.FixedIncrementalCellCycle method) (lattics.domains.Structured2DSimulationDomain method) (lattics.domains.UnstructuredSimulationDomain method)

initialize_attribute() (lattics.agent.Agent method) is_empty_position() (lattics.domains.Structured2DSimulationDomain method) is_valid_position() (lattics.domains.Structured2DSimulationDomain method)

L

lattics module lattics.agent module lattics.cellfunctions module lattics.domains module lattics.numba_functions module lattics.simulation module

lattics.tests module lattics.tests.conftest module lattics.tests.test_agent_functions module lattics.tests.test_cell_function_models module lattics.tests.test_simulation_fundamentals module

M

module lattics lattics.agent lattics.cellfunctions lattics.domains lattics.numba_functions lattics.simulation lattics.tests lattics.tests.conftest lattics.tests.test_agent_functions lattics.tests.test_cell_function_models lattics.tests.test_simulation_fundamentals

P

pairwise_interaction_energy_2d() (in module lattics.numba_functions)

R

remove_agent() (lattics.domains.SimulationDomain method) (lattics.domains.Structured2DSimulationDomain method) (lattics.domains.UnstructuredSimulationDomain method) (lattics.simulation.Simulation method)

run() (lattics.simulation.Simulation method)

S

set_agent() (lattics.cellfunctions.CellFunctionModel method) set_attribute() (lattics.agent.Agent method) set_update_interval() (lattics.cellfunctions.CellFunctionModel method)

Simulation (class in lattics.simulation) simulation (lattics.agent.Agent property) SimulationDomain (class in lattics.domains) Structured2DSimulationDomain (class in lattics.domains)

T

test_agent_addition_no_space() (in module lattics.tests.test_simulation_fundamentals) test_agent_addition_no_space_gives_warning() (in module lattics.tests.test_simulation_fundamentals) test_agent_removal_no_space() (in module lattics.tests.test_simulation_fundamentals) test_default_instantiation() (in module lattics.tests.test_agent_functions) (in module lattics.tests.test_simulation_fundamentals)

test_simulation_run_elapsed_time() (in module lattics.tests.test_simulation_fundamentals) test_status_flag_initialization_get_set_bool() (in module lattics.tests.test_agent_functions) test_status_flag_initialization_get_set_str() (in module lattics.tests.test_agent_functions) time (lattics.simulation.Simulation property) total_interaction_energy_2d() (in module lattics.numba_functions) tridiag_solver() (in module lattics.numba_functions)

U

UnstructuredSimulationDomain (class in lattics.domains) update() (lattics.cellfunctions.CellFunctionModel method) (lattics.domains.SimulationDomain method) (lattics.domains.Structured2DSimulationDomain method) (lattics.domains.UnstructuredSimulationDomain method)

update_models() (lattics.agent.Agent method)